Brennon Shanks
Brennon Shanks
Home
Posts
Projects
Publications
Presentations
Courses
Molecular Simulations
Contact
thermodynamics
Uncertainty-Aware Liquid State Modeling from Experimental Scattering Measurements
This dissertation is founded on the central notion that structural correlations in dense fluids, such as dense gases, liquids, and …
Brennon L. Shanks
Cite
Bayesian Analysis Reveals the Key to Extracting Pair Potentials from Neutron Scattering Data
The inverse problem of statistical mechanics is an unsolved, century-old challenge to learn classical pair potentials directly from …
Brennon L. Shanks
,
Harry W. Sullivan
,
Michael P. Hoepfner
PDF
Cite
Code
Accelerated Bayesian Inference for Molecular Simulations using Local Gaussian Process Surrogate Models
While Bayesian inference is the gold standard for uncertainty quantification and propagation, its use within physical chemistry …
Brennon L. Shanks
,
Harry W. Sullivan
,
Abdur R. Shazed
,
Michael P. Hoepfner
PDF
Cite
Code
DOI
Structure Optimized Potential Refinement (SOPR)
Structure-optimized potential refinement (SOPR) is a machine learning assisted iterative Boltzmann inversion method designed to predict accurate and transferable interaction potentials from a provided set of site-site partial radial distribution functions.
Brennon L. Shanks
Bayesian Force Field Optimization
Structure and self-assembly are complex, emergent properties of matter that are often misrepresented by existing molecular simulation models. In this project, we use Bayesian optimization, an accurate and robust statistical method, to optimize novel force fields based on experimental neutron/X-ray diffraction data to better model the structural behavior of liquid state systems.
Brennon L. Shanks
Many-Body Effects from Neutron Scattering
Neutron/X-ray diffraction measurements can be utilized to quantify many-body interactions at the same length scale as the interatomic interactions. We use a combination of electron structure theory and structure-optimized potential refinement to directly quantify the influence of third- and higher-order effects for real fluid ensembles.
Brennon L. Shanks
Thermodynamic Stability Criterion
The thermodynamic requirement that the second derivative of energy be positive gives rise to some interesting results on thermodynamic system stability. To see this, let’s first construct an intrinsic system and a complimentary subsystem from a composite, isolated system.
Brennon L. Shanks
Last updated on Jul 15, 2023
4 min read
Cite
Transferable Force Fields from Experimental Scattering Data with Machine Learning Assisted Structure Refinement
Deriving transferable pair potentials from experimental neutron and X-ray scattering measurements has been a longstanding challenge in …
Brennon L. Shanks
,
J. J. Potoff
,
M. P. Hoepfner
PDF
Cite
Code
DOI
Cite
×