Brennon Shanks
Brennon Shanks
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thermodynamics
Uncertainty-Aware Liquid State Modeling from Experimental Scattering Measurements
This dissertation is founded on the central notion that structural correlations in dense fluids, such as dense gases, liquids, and …
Brennon L. Shanks
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Bayesian Analysis Reveals the Key to Extracting Pair Potentials from Neutron Scattering Data
Learning interaction potentials from the structure factor is frequently seen as impractical due to accuracy constraints of neutron and …
Brennon L. Shanks
,
Harry W. Sullivan
,
Michael P. Hoepfner
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Accelerated Bayesian Inference for Molecular Simulations using Local Gaussian Process Surrogate Models
While Bayesian inference is the gold standard for uncertainty quantification and propagation, its use within physical chemistry …
Brennon L. Shanks
,
Harry W. Sullivan
,
Abdur R. Shazed
,
Michael P. Hoepfner
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Structure Optimized Potential Refinement (SOPR)
Structure-optimized potential refinement (SOPR) is a machine learning assisted iterative Boltzmann inversion method designed to predict accurate and transferable interaction potentials from a provided set of site-site partial radial distribution functions.
Brennon L. Shanks
Bayesian Force Field Optimization
Structure and self-assembly are complex, emergent properties of matter that are often misrepresented by existing molecular simulation models. In this project, we use Bayesian optimization, an accurate and robust statistical method, to optimize novel force fields based on experimental neutron/X-ray diffraction data to better model the structural behavior of liquid state systems.
Brennon L. Shanks
Gaussian Processes for Structural Analysis
Gaussian processes provide a Bayesian framework to analyze experimental scattering data while performing rigorous uncertainty quantification and propagation (UQ/P). Our team uses state-of-the-art Gaussian process approaches, including spectral and non-stationary kernel design, to design next generation scattering analysis tools.
Brennon L. Shanks
Thermodynamic Stability Criterion
The thermodynamic requirement that the second derivative of energy be positive gives rise to some interesting results on thermodynamic system stability. To see this, let’s first construct an intrinsic system and a complimentary subsystem from a composite, isolated system.
Brennon L. Shanks
Last updated on Jul 15, 2023
4 min read
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Transferable Force Fields from Experimental Scattering Data with Machine Learning Assisted Structure Refinement
Deriving transferable pair potentials from experimental neutron and X-ray scattering measurements has been a longstanding challenge in …
Brennon L. Shanks
,
J. J. Potoff
,
M. P. Hoepfner
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